Detailed information of SNP:
|
SNP ID:
sf0815803979(Gbrowse)
Chromosome: chr08 Position: 15803979 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.46% | 14.54% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815803979 | C->T | LOC_Os08g25970(LOC_Os08g25970.1) | Synonymous |