Detailed information of SNP:
|
SNP ID:
sf0815814444(Gbrowse)
Chromosome: chr08 Position: 15814444 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1185 | 83.38% | 16.62% |
| All Indica | 585 | 81.03% | 18.97% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 53 | 92.45% | 7.55% |
| Indica I | 262 | 79.77% | 20.23% |
| Indica II | 158 | 87.34% | 12.66% |
| Indica Intermediate | 165 | 76.97% | 23.03% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815814444 | T->C | LOC_Os08g25990(LOC_Os08g25990.1) | INTRON |