Detailed information of SNP:
|
SNP ID:
sf0815894313(Gbrowse)
Chromosome: chr08 Position: 15894313 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 97.08% | 2.92% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 491 | 97.35% | 2.65% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 86.36% | 13.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815894313 | A->C | INTERGENIC | None |