Detailed information of SNP:
|
SNP ID:
sf0815901669(Gbrowse)
Chromosome: chr08 Position: 15901669 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.51% | 4.49% |
| All Indica | 785 | 92.87% | 7.13% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 207 | 79.71% | 20.29% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815901669 | G->T | LOC_Os08g26140(LOC_Os08g26140.1) | Non-Synonymous SNP |