Detailed information of SNP:
|
SNP ID:
sf0815914264(Gbrowse)
Chromosome: chr08 Position: 15914264 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 98.07% | 1.93% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 486 | 96.09% | 3.91% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 86 | 88.37% | 11.63% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815914264 | C->T | INTERGENIC | None |