Detailed information of SNP:
|
SNP ID:
sf0815978341(Gbrowse)
Chromosome: chr08 Position: 15978341 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 65.64% | 34.36% |
| All Indica | 788 | 91.75% | 8.25% |
| All Japonica | 489 | 19.02% | 80.98% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 90 | 76.67% | 23.33% |
| Japonica Intermediate | 65 | 27.69% | 72.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0815978341 | G->T | INTERGENIC | None |