Detailed information of SNP:
|
SNP ID:
sf0816039389(Gbrowse)
Chromosome: chr08 Position: 16039389 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 94.10% | 5.90% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 490 | 88.57% | 11.43% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 88 | 48.86% | 51.14% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816039389 | G->A | INTERGENIC | None |