Detailed information of SNP:
|
SNP ID:
sf0816067130(Gbrowse)
Chromosome: chr08 Position: 16067130 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 67.56% | 32.44% |
| All Indica | 795 | 97.23% | 2.77% |
| All Japonica | 495 | 17.78% | 82.22% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816067130 | A->G | INTERGENIC | None |