Detailed information of SNP:
|
SNP ID:
sf0816071167(Gbrowse)
Chromosome: chr08 Position: 16071167 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 64.05% | 35.95% |
| All Indica | 780 | 94.36% | 5.64% |
| All Japonica | 493 | 17.44% | 82.56% |
| Aus | 51 | 70.59% | 29.41% |
| Indica I | 363 | 97.80% | 2.20% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816071167 | T->C | INTERGENIC | None |