Detailed information of SNP:
|
SNP ID:
sf0816079890(Gbrowse)
Chromosome: chr08 Position: 16079890 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 91.04% | 8.96% |
| All Indica | 778 | 84.19% | 15.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 82.74% | 17.26% |
| Indica II | 205 | 86.34% | 13.66% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816079890 | G->A | LOC_Os08g26390(LOC_Os08g26390.1) | Non-Synonymous SNP |