Detailed information of SNP:
|
SNP ID:
sf0816080081(Gbrowse)
Chromosome: chr08 Position: 16080081 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 97.55% | 2.45% |
| All Indica | 776 | 97.55% | 2.45% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 365 | 99.73% | 0.27% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 205 | 97.56% | 2.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816080081 | G->A | LOC_Os08g26390(LOC_Os08g26390.1) | INTRON |