Detailed information of SNP:
|
SNP ID:
sf0816080647(Gbrowse)
Chromosome: chr08 Position: 16080647 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 50.40% | 49.60% |
| All Indica | 763 | 23.72% | 76.28% |
| All Japonica | 491 | 94.30% | 5.70% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 359 | 25.35% | 74.65% |
| Indica II | 203 | 18.23% | 81.77% |
| Indica Intermediate | 201 | 26.37% | 73.63% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 77.78% | 22.22% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816080647 | T->C | LOC_Os08g26390(LOC_Os08g26390.1) | INTRON |