Detailed information of SNP:
|
SNP ID:
sf0816080701(Gbrowse)
Chromosome: chr08 Position: 16080701 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 91.11% | 8.89% |
| All Indica | 790 | 88.48% | 11.52% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 54.69% | 45.31% |
| Indica I | 369 | 85.91% | 14.09% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816080701 | A->G | LOC_Os08g26390(LOC_Os08g26390.1) | Synonymous |