Detailed information of SNP:
|
SNP ID:
sf0816080882(Gbrowse)
Chromosome: chr08 Position: 16080882 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 52.54% | 47.46% |
| All Indica | 771 | 78.99% | 21.01% |
| All Japonica | 491 | 8.55% | 91.45% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 362 | 75.97% | 24.03% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 206 | 77.67% | 22.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 88 | 39.77% | 60.23% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816080882 | T->C | LOC_Os08g26390(LOC_Os08g26390.1) | Non-Synonymous SNP |