Detailed information of SNP:
|
SNP ID:
sf0816084186(Gbrowse)
Chromosome: chr08 Position: 16084186 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1310 | 88.32% | 11.68% |
| All Indica | 716 | 84.50% | 15.50% |
| All Japonica | 488 | 95.49% | 4.51% |
| Aus | 53 | 69.81% | 30.19% |
| Indica I | 333 | 85.59% | 14.41% |
| Indica II | 192 | 82.29% | 17.71% |
| Indica Intermediate | 191 | 84.82% | 15.18% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 87 | 81.61% | 18.39% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816084186 | T->C | INTERGENIC | None |