Detailed information of SNP:
|
SNP ID:
sf0816098550(Gbrowse)
Chromosome: chr08 Position: 16098550 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1246 | 74.88% | 25.12% |
| All Indica | 684 | 60.09% | 39.91% |
| All Japonica | 459 | 95.42% | 4.58% |
| Aus | 51 | 78.43% | 21.57% |
| Indica I | 306 | 70.26% | 29.74% |
| Indica II | 193 | 44.04% | 55.96% |
| Indica Intermediate | 185 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 63 | 82.54% | 17.46% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816098550 | T->C | INTERGENIC | None |