Detailed information of SNP:
|
SNP ID:
sf0816109162(Gbrowse)
Chromosome: chr08 Position: 16109162 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 94.32% | 5.68% |
| All Indica | 791 | 95.32% | 4.68% |
| All Japonica | 495 | 92.53% | 7.47% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816109162 | G->A | INTERGENIC | None |