Detailed information of SNP:
|
SNP ID:
sf0816112575(Gbrowse)
Chromosome: chr08 Position: 16112575 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 85.84% | 14.16% |
| All Indica | 782 | 94.12% | 5.88% |
| All Japonica | 496 | 71.77% | 28.23% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 363 | 93.39% | 6.61% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 66.27% | 33.73% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816112575 | A->G | LOC_Os08g26450(LOC_Os08g26450.1) | Non-Synonymous SNP |