Detailed information of SNP:
|
SNP ID:
sf0816114352(Gbrowse)
Chromosome: chr08 Position: 16114352 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 84.99% | 15.01% |
| All Indica | 738 | 85.09% | 14.91% |
| All Japonica | 493 | 87.02% | 12.98% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 340 | 79.71% | 20.29% |
| Indica II | 202 | 91.09% | 8.91% |
| Indica Intermediate | 196 | 88.27% | 11.73% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816114352 | G->T | LOC_Os08g26450(LOC_Os08g26450.1) | Non-Synonymous SNP |