Detailed information of SNP:
|
SNP ID:
sf0816114380(Gbrowse)
Chromosome: chr08 Position: 16114380 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 94.58% | 5.42% |
| All Indica | 788 | 98.35% | 1.65% |
| All Japonica | 492 | 90.45% | 9.55% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 367 | 97.28% | 2.72% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816114380 | C->T | LOC_Os08g26450(LOC_Os08g26450.1) | Synonymous |