Detailed information of SNP:
|
SNP ID:
sf0816116469(Gbrowse)
Chromosome: chr08 Position: 16116469 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 96.01% | 3.99% |
| All Indica | 790 | 98.10% | 1.90% |
| All Japonica | 490 | 93.67% | 6.33% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 87 | 75.86% | 24.14% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816116469 | T->C | INTERGENIC | None |