Detailed information of SNP:
|
SNP ID:
sf0816117202(Gbrowse)
Chromosome: chr08 Position: 16117202 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 93.71% | 6.29% |
| All Indica | 765 | 89.02% | 10.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 355 | 86.48% | 13.52% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 200 | 92.50% | 7.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816117202 | G->C | INTERGENIC | None |