Detailed information of SNP:
|
SNP ID:
sf0816152317(Gbrowse)
Chromosome: chr08 Position: 16152317 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 66.20% | 33.80% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816152317 | A->C | INTERGENIC | None |