Detailed information of SNP:
|
SNP ID:
sf0816155292(Gbrowse)
Chromosome: chr08 Position: 16155292 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 65.56% | 34.44% |
| All Indica | 793 | 94.70% | 5.30% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816155292 | G->A | INTERGENIC | None |