Detailed information of SNP:
|
SNP ID:
sf0816170305(Gbrowse)
Chromosome: chr08 Position: 16170305 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 50.14% | 49.86% |
| All Indica | 771 | 72.24% | 27.76% |
| All Japonica | 495 | 12.93% | 87.07% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 364 | 79.12% | 20.88% |
| Indica II | 201 | 63.68% | 36.32% |
| Indica Intermediate | 206 | 68.45% | 31.55% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 52.17% | 47.83% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816170305 | T->C | INTERGENIC | None |