Detailed information of SNP:
|
SNP ID:
sf0816172907(Gbrowse)
Chromosome: chr08 Position: 16172907 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 87.24% | 12.76% |
| All Indica | 782 | 91.18% | 8.82% |
| All Japonica | 492 | 79.27% | 20.73% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 92.62% | 7.38% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 74.63% | 25.37% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816172907 | T->C | INTERGENIC | None |