Detailed information of SNP:
|
SNP ID:
sf0816192494(Gbrowse)
Chromosome: chr08 Position: 16192494 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 96.04% | 3.96% |
| All Indica | 793 | 99.87% | 0.13% |
| All Japonica | 448 | 88.62% | 11.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 85.27% | 14.73% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 62 | 88.71% | 11.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816192494 | T->G | INTERGENIC | None |