Detailed information of SNP:
|
SNP ID:
sf0816194420(Gbrowse)
Chromosome: chr08 Position: 16194420 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 88.86% | 11.14% |
| All Indica | 742 | 80.86% | 19.14% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 356 | 94.66% | 5.34% |
| Indica II | 191 | 65.45% | 34.55% |
| Indica Intermediate | 195 | 70.77% | 29.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816194420 | C->T | INTERGENIC | None |