Detailed information of SNP:
|
SNP ID:
sf0816198315(Gbrowse)
Chromosome: chr08 Position: 16198315 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1301 | 87.70% | 12.30% |
| All Indica | 689 | 78.66% | 21.34% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 309 | 73.79% | 26.21% |
| Indica II | 188 | 83.51% | 16.49% |
| Indica Intermediate | 192 | 81.77% | 18.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816198315 | C->T | LOC_Os08g26650(LOC_Os08g26650.1) | Non-Synonymous SNP |