Detailed information of SNP:
|
SNP ID:
sf0816198737(Gbrowse)
Chromosome: chr08 Position: 16198737 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 60.99% | 39.01% |
| All Indica | 774 | 88.50% | 11.50% |
| All Japonica | 495 | 15.96% | 84.04% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 363 | 84.85% | 15.15% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816198737 | A->G | LOC_Os08g26650(LOC_Os08g26650.1) | Non-Synonymous SNP |