Detailed information of SNP:
|
SNP ID:
sf0816200073(Gbrowse)
Chromosome: chr08 Position: 16200073 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 94.86% | 5.14% |
| All Indica | 781 | 91.55% | 8.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 92.05% | 7.95% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816200073 | A->T | LOC_Os08g26650(LOC_Os08g26650.1) | Non-Synonymous SNP |