Detailed information of SNP:
|
SNP ID:
sf0816200960(Gbrowse)
Chromosome: chr08 Position: 16200960 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 89.96% | 10.04% |
| All Indica | 754 | 85.94% | 14.06% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 358 | 91.34% | 8.66% |
| Indica II | 199 | 83.92% | 16.08% |
| Indica Intermediate | 197 | 78.17% | 21.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816200960 | A->G | INTERGENIC | None |