Detailed information of SNP:
|
SNP ID:
sf0816204105(Gbrowse)
Chromosome: chr08 Position: 16204105 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 53.32% | 46.68% |
| All Indica | 752 | 26.86% | 73.14% |
| All Japonica | 488 | 93.03% | 6.97% |
| Aus | 62 | 50.00% | 50.00% |
| Indica I | 350 | 33.14% | 66.86% |
| Indica II | 205 | 18.54% | 81.46% |
| Indica Intermediate | 197 | 24.37% | 75.63% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 64.37% | 35.63% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816204105 | A->C | INTERGENIC | None |