Detailed information of SNP:
|
SNP ID:
sf0816204134(Gbrowse)
Chromosome: chr08 Position: 16204134 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 58.88% | 41.12% |
| All Indica | 749 | 35.38% | 64.62% |
| All Japonica | 491 | 93.89% | 6.11% |
| Aus | 62 | 53.23% | 46.77% |
| Indica I | 352 | 40.91% | 59.09% |
| Indica II | 202 | 26.73% | 73.27% |
| Indica Intermediate | 195 | 34.36% | 65.64% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 70.00% | 30.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816204134 | A->G | INTERGENIC | None |