Detailed information of SNP:
|
SNP ID:
sf0816206195(Gbrowse)
Chromosome: chr08 Position: 16206195 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 86.69% | 13.31% |
| All Indica | 793 | 79.07% | 20.93% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 207 | 73.91% | 26.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816206195 | G->A | INTERGENIC | None |