Detailed information of SNP:
|
SNP ID:
sf0816217547(Gbrowse)
Chromosome: chr08 Position: 16217547 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 73.16% | 26.84% |
| All Indica | 795 | 58.49% | 41.51% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 45.31% | 54.69% |
| Indica I | 374 | 59.89% | 40.11% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816217547 | C->T | LOC_Os08g26685(LOC_Os08g26685.1) | Synonymous |