Detailed information of SNP:
|
SNP ID:
sf0816217949(Gbrowse)
Chromosome: chr08 Position: 16217949 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.22% | 26.78% |
| All Indica | 796 | 58.79% | 41.21% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 374 | 60.43% | 39.57% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816217949 | C->A | LOC_Os08g26685(LOC_Os08g26685.1) | INTRON |