Detailed information of SNP:
|
SNP ID:
sf0816225663(Gbrowse)
Chromosome: chr08 Position: 16225663 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1320 | 93.41% | 6.59% |
| All Indica | 728 | 94.51% | 5.49% |
| All Japonica | 479 | 90.40% | 9.60% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 335 | 90.45% | 9.55% |
| Indica II | 201 | 99.00% | 1.00% |
| Indica Intermediate | 192 | 96.88% | 3.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 79 | 74.68% | 25.32% |
| Japonica Intermediate | 65 | 64.62% | 35.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816225663 | T->C | INTERGENIC | None |