Detailed information of SNP:
|
SNP ID:
sf0816226552(Gbrowse)
Chromosome: chr08 Position: 16226552 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 88.54% | 11.46% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 493 | 69.98% | 30.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 66.57% | 33.43% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816226552 | T->G | LOC_Os08g26690(LOC_Os08g26690.1) | INTRON |