Detailed information of SNP:
|
SNP ID:
sf0816226950(Gbrowse)
Chromosome: chr08 Position: 16226950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 51.26% | 48.74% |
| All Indica | 778 | 24.81% | 75.19% |
| All Japonica | 492 | 94.51% | 5.49% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 365 | 25.21% | 74.79% |
| Indica II | 210 | 25.24% | 74.76% |
| Indica Intermediate | 203 | 23.65% | 76.35% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 76.67% | 23.33% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816226950 | G->A | LOC_Os08g26690(LOC_Os08g26690.1) | INTRON |