Detailed information of SNP:
|
SNP ID:
sf0816228431(Gbrowse)
Chromosome: chr08 Position: 16228431 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 68.05% | 31.95% |
| All Indica | 745 | 49.13% | 50.87% |
| All Japonica | 493 | 96.96% | 3.04% |
| Aus | 61 | 54.10% | 45.90% |
| Indica I | 347 | 48.99% | 51.01% |
| Indica II | 198 | 52.53% | 47.47% |
| Indica Intermediate | 200 | 46.00% | 54.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816228431 | A->G | LOC_Os08g26690(LOC_Os08g26690.1) | INTRON |