Detailed information of SNP:
|
SNP ID:
sf0816231843(Gbrowse)
Chromosome: chr08 Position: 16231843 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 53.22% | 46.78% |
| All Indica | 771 | 24.12% | 75.88% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 62 | 46.77% | 53.23% |
| Indica I | 360 | 24.17% | 75.83% |
| Indica II | 210 | 24.29% | 75.71% |
| Indica Intermediate | 201 | 23.88% | 76.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816231843 | A->G | INTERGENIC | None |