Detailed information of SNP:
|
SNP ID:
sf0816231860(Gbrowse)
Chromosome: chr08 Position: 16231860 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 52.52% | 47.48% |
| All Indica | 765 | 23.14% | 76.86% |
| All Japonica | 492 | 97.36% | 2.64% |
| Aus | 58 | 41.38% | 58.62% |
| Indica I | 354 | 22.88% | 77.12% |
| Indica II | 209 | 22.97% | 77.03% |
| Indica Intermediate | 202 | 23.76% | 76.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 88.89% | 11.11% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816231860 | A->C | INTERGENIC | None |