Detailed information of SNP:
|
SNP ID:
sf0816236425(Gbrowse)
Chromosome: chr08 Position: 16236425 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 98.52% | 1.48% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816236425 | G->T | LOC_Os08g26700(LOC_Os08g26700.1) | Non-Synonymous SNP |
| sf0816236425 | G->T | LOC_Os08g26700(LOC_Os08g26700.3) | INTRON |
| sf0816236425 | G->T | LOC_Os08g26700(LOC_Os08g26700.2) | INTRON |