Detailed information of SNP:



SNP ID: sf0816236425(Gbrowse)

Chromosome: chr08

Position: 16236425
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 98.52% 1.48%
All Indica799 97.37% 2.63%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 90.61% 9.39%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0816236425 G->T LOC_Os08g26700(LOC_Os08g26700.1) Non-Synonymous SNP
sf0816236425 G->T LOC_Os08g26700(LOC_Os08g26700.3) INTRON
sf0816236425 G->T LOC_Os08g26700(LOC_Os08g26700.2) INTRON