Detailed information of SNP:
|
SNP ID:
sf0816270658(Gbrowse)
Chromosome: chr08 Position: 16270658 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1320 | 87.73% | 12.27% |
| All Indica | 709 | 80.54% | 19.46% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 336 | 78.87% | 21.13% |
| Indica II | 190 | 83.68% | 16.32% |
| Indica Intermediate | 183 | 80.33% | 19.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816270658 | C->T | LOC_Os08g26760(LOC_Os08g26760.1) | INTRON |