Detailed information of SNP:
|
SNP ID:
sf0816273285(Gbrowse)
Chromosome: chr08 Position: 16273285 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 66.48% | 33.52% |
| All Indica | 791 | 97.22% | 2.78% |
| All Japonica | 494 | 15.18% | 84.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816273285 | A->G | LOC_Os08g26770(LOC_Os08g26770.1) | Non-Synonymous SNP |