Detailed information of SNP:
|
SNP ID:
sf0816273320(Gbrowse)
Chromosome: chr08 Position: 16273320 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1324 | 50.53% | 49.47% |
| All Indica | 718 | 18.80% | 81.20% |
| All Japonica | 492 | 94.92% | 5.08% |
| Aus | 60 | 50.00% | 50.00% |
| Indica I | 331 | 16.62% | 83.38% |
| Indica II | 194 | 21.65% | 78.35% |
| Indica Intermediate | 193 | 19.69% | 80.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 78.65% | 21.35% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816273320 | A->G | LOC_Os08g26770(LOC_Os08g26770.1) | Synonymous |