Detailed information of SNP:
|
SNP ID:
sf0816273825(Gbrowse)
Chromosome: chr08 Position: 16273825 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 52.87% | 47.13% |
| All Indica | 762 | 85.56% | 14.44% |
| All Japonica | 494 | 6.28% | 93.72% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 360 | 86.11% | 13.89% |
| Indica II | 204 | 83.33% | 16.67% |
| Indica Intermediate | 198 | 86.87% | 13.13% |
| Temperate Japonica | 333 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816273825 | T->A | LOC_Os08g26770(LOC_Os08g26770.1) | Non-Synonymous SNP |