Detailed information of SNP:
|
SNP ID:
sf0816274497(Gbrowse)
Chromosome: chr08 Position: 16274497 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 61.05% | 38.95% |
| All Indica | 776 | 36.21% | 63.79% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 364 | 39.56% | 60.44% |
| Indica II | 209 | 31.10% | 68.90% |
| Indica Intermediate | 203 | 35.47% | 64.53% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816274497 | C->T | INTERGENIC | None |