Detailed information of SNP:
|
SNP ID:
sf0816274520(Gbrowse)
Chromosome: chr08 Position: 16274520 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 57.07% | 42.93% |
| All Indica | 779 | 33.63% | 66.37% |
| All Japonica | 492 | 92.68% | 7.32% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 364 | 37.91% | 62.09% |
| Indica II | 210 | 27.62% | 72.38% |
| Indica Intermediate | 205 | 32.20% | 67.80% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 63.74% | 36.26% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816274520 | A->G | INTERGENIC | None |